Introduction to scientific computing

from Monday, 4 October 2021 (09:00) to Monday, 25 October 2021 (18:30)
GIGA meeting rooms (Guysen)

        : Sessions
    /     : Talks
        : Breaks
5 Oct 2021
11 Oct 2021
18 Oct 2021
25 Oct 2021
AM
09:30 Welcome + Introduction to computer science : historical perspective, computer structure, operating systems & languages - Prof. Christophe Phillips (GIGA in silico medicine & CRC in vivo imaging)   (Guysen)
10:00 Data representation & storage: bits/bytes, data format, signal discretization, compression - Dr Mohamed Bahri   (Guysen)
11:00 --- Coffee break ---
11:30 ULiège IT resources by the SeGI/UDI’s - Mr Yves Wesche   (Guysen)
09:30 Introduction to algorithmic thinking: Different types of algorithms, computer logic. - Dr Mohamed Bahri   (Guysen)
10:30 --- Coffee break ---
11:00 Code versioning & Git, an introduction. - Prof. Christophe Phillips (GIGA in silico medicine & CRC in vivo imaging)   (Guysen)
09:30 Good practices in scientific computing: Code modularity, validation, optimization, documentation - Prof. Christophe Phillips (GIGA in silico medicine & CRC in vivo imaging)   (Guysen)
10:30 --- Coffee break ---
11:00 Working with High Performance Computing Clusters & parallel processing (including hands-on on GIGA cluster). - Dr Alice Mayer   (Guysen)
09:30 Working with personal data ? Think GDPR! - Mr Pierre-François Pirlet   (Guysen)
10:30 --- Coffee break ---
11:00 Data processing in genomics, from the sequencers to the results: data management, pipelines and containers, reproductibility. - Dr Arnaud Lavergne   (Guysen)
PM
12:00 GIGA-ULiege Mass storage - David Stern   (Guysen)
12:30 --- Lunch break ---
13:30 Access to and use of the mass storage - Dr Alice Mayer   (Guysen)
14:30 --- Coffee break ---
15:00 Matlab & Octave practical - Dr Mohamed Bahri Prof. Christophe Phillips (GIGA in silico medicine & CRC in vivo imaging)   (Guysen)
12:00 --- Lunch break ---
13:00 GitHub/Gitlab account hands-on check and explanations - Dr Grégory Hammad (GIGA-CRC in vivo imaging) Martin Grignard   (Guysen)
15:00 --- Coffee break ---
15:30 Matlab & Octave practical - Dr Mohamed Bahri Prof. Christophe Phillips (GIGA in silico medicine & CRC in vivo imaging)   (Guysen)
13:00 --- Lunch break ---
14:00 Research Data Management and Reproducibility: good habits for good research - Dr Judith Biernaux (ARD ULiege)   (Guysen)
15:00 --- Coffee break ---
15:30 Matlab & Octave practical - Dr Mohamed Bahri Prof. Christophe Phillips (GIGA in silico medicine & CRC in vivo imaging)   (Guysen)
12:00 --- Lunch break ---
13:00 Data processing in genomics, hands-on - Dr Arnaud Lavergne (GIGA)   (Guysen)
15:00 --- Coffee break ---
15:30 Matlab & Octave practical - Prof. Christophe Phillips (GIGA in silico medicine & CRC in vivo imaging) Dr Mohamed Bahri   (Guysen)