Name: Lecture - Introduction to Modern Sequencing (BIF-IMS0002)
Start: 2023-04-11T14:00:00+02:00
End: 2023-04-13T17:00:00+02:00
Location: GIGA meeting rooms

Tuesday, 11 April
- 14:00 → 16:30
  
  Introduction to Next Generation Sequencing 2h 30m
  
  Next-Generation Sequencing (NGS), also called High-Throughput Sequencing (HTS), is a technology allowing the massively parallel processing of millions of sequences per run.
  
  During this lecture (~2hrs), we will discuss both the theorical and practical aspects behind this technology. Sample selection, RNA/DNA extraction and library preparation are common steps for different applications of NGS/HTS. We will discuss data analysis, which will be slightly different from an application to another one, while some important steps are similar and fundamental in most NGS/HTS applications. Finally, we will have a first insight into the concept of pipeline and analysis reproductibility.
  
  At the end of the lecture, participants will be familiar with NGS/HTS technology and the different steps associated with a NGS/HTS experiment. They will also understand what are the key elements to consider when starting a NGS/HTS project.
  
  Speaker: Dr Arnaud Lavergne (GIGA)
  
  INTRO_NGS.pdf
Wednesday, 12 April
- 14:00 → 16:30
  
  Introduction to RNA Sequencing 2h 30m
  
  RNA Sequencing (RNASeq) is one of the most famous applications of NGS/HTS technology. It allows the study of gene expression at the genome-wide level.
  
  During this lecture, we will discuss both theorical and practical aspects underlying the classical RNASeq process. We will also cover some variations of the protocol and different alternative methods. Moreover we will explore important steps in a RNAseq data analysis and describe the input/output files involved.
  
  At the end of the lecture, participants will be familiar with the RNASeq application and the different steps associated. They will be able to explain the key elements/steps to consider in a RNASeq project.
  
  Speaker: Dr Arnaud Lavergne (GIGA)
  
  Introduction_RNAseq.pdf
Thursday, 13 April
- 14:00 → 16:30
  
  Introduction to Single-Cell Sequencing 2h 30m
  
  Single-Cell (SC) sequencing allows to study sequencing information at the level of an individual cell. After the individualization of your cells, you can apply your favorite NGS technology to your sample.
  
  During this lecture, we will discuss both theorical and practical aspects underlying the SC sequencing process. We will then discuss further the technology in the context of single-cell RNA sequencing (scRNAseq) and how it differs from "bulk" RNAseq data in terms of data analysis.
  
  At the end of the lecture, participants will be familiar with the SC sequencing technology and its applications in the context of RNAseq. They will be able to explain the key elements/steps to consider in a scRNASeq project.
  
  Speaker: Dr Arnaud Lavergne (GIGA)
  
  INTRODUCTION TO SC.pdf

Lecture - Introduction to Modern Sequencing (BIF-IMS0002)

B34/+5-41 - Petite Ghuysen

GIGA meeting rooms